How to check VAT and CIS in construction payments
Keep the value of the work, VAT treatment, CIS deduction and cash payment separate. Check the evidence before approving the payment record.
by Jack Butler-Kettle · About 4 min readShare
Before you start
Gather the contract assessment, invoice, registration checks, CIS verification result and supporting costs. Identify who confirms the tax treatment.
VAT and the Construction Industry Scheme (CIS) answer different questions. VAT determines the tax treatment of the supply. CIS can require a contractor to deduct tax when paying a subcontractor.
Neither replaces the contractual valuation or payment procedure. This guide covers UK construction payment reconciliation, not every tax exception. Confirm uncertain treatment with your accountant. Sources checked on 25 October 2026.
Step-by-step guide
1. Establish the payment and parties
Identify the supplier, customer, work covered, payment period and agreed valuation basis. Reconcile retention, previous assessments and other contractual adjustments before considering tax.
Keep the application, assessment, invoice and payment ledger linked by reference. They perform different jobs, even when one document contains several of them.
Check the relevant business registrations and who is responsible for the tax decision. Do not infer VAT or CIS status from a company name.
Our interim valuation guide explains the commercial calculation. The payment and notices explanation covers the separate procedural checks.
2. Check VAT treatment
Use HMRC guidance for buyers of construction services to check whether the domestic reverse charge applies. Check both VAT registrations, the service supplied, CIS reporting and the applicable VAT rate.
The reverse charge generally concerns qualifying standard-rated or reduced-rated construction services. Zero-rated supplies and supplies of staff require different treatment.
Check any end-user or intermediary-supplier exclusion. Keep the required written notification with the relevant supply records. Being a property owner alone is not sufficient evidence.
Under the reverse charge, the customer accounts for the VAT instead of paying that VAT to the supplier. It does not make the supply zero-rated.
The HMRC technical guide explains exclusions, mixed supplies and invoice requirements. Check the actual supply rather than assuming every payment on one project has identical treatment.
3. Calculate CIS
Follow the rate HMRC supplies through verification. The standard deduction rates are 20% or 30%; gross payment status means no CIS deduction.
HMRC guidance on CIS deductions identifies the amounts excluded from the deduction base. These include VAT and eligible materials paid for directly by the subcontractor.
Check the evidence of actual allowable costs. An invoice description or materials selling price does not by itself establish the deductible materials cost.
Calculate CIS on the remaining amount using the verified rate. A gross payment status subcontractor can still make supplies subject to the VAT reverse charge.
Keep CIS distinct from retention, a disputed valuation or a contra-charge. The deduction is paid to HMRC on the subcontractor's behalf, not retained as a commercial saving.
4. Reconcile and retain the evidence
Prepare a payment bridge showing assessed value, contractual adjustments, VAT treatment, CIS base, CIS deduction and cash payable. Identify every amount by its purpose.
Check that the invoice contains the required VAT information, including reverse-charge wording where applicable. Ask the accounts team to confirm the posting.
Retain the assessment, invoice, verification result, materials evidence, payment reference and any end-user notification. Record who checked exceptions and when.
Where CIS deductions are made, HMRC requires a payment and deduction statement within 14 days of the tax month's end.
Use actual expected receipts in your cash-flow forecast. Do not forecast reverse-charge VAT as money received from the customer.
Payment assessment support can help reconcile the commercial records. Tax treatment and returns remain matters to confirm with the responsible accounts adviser.
Before you finish: Check that assessed value, VAT, CIS and cash reconcile. Resolve uncertain treatment with the accounts adviser before approval.
Worked example
The facts
Fictional example: £10,000 is payable before tax, with no retention or previous-payment adjustment. Allowable materials cost £2,000. HMRC confirms 20% CIS. The supply qualifies for the 20% VAT reverse charge.
What happens
The CIS base is £10,000 minus £2,000, giving £8,000. The CIS deduction is £8,000 × 20% = £1,600.
Cash paid to the subcontractor is £10,000 minus £1,600, giving £8,400. The contractor accounts for the £1,600 CIS deduction to HMRC.
The customer separately accounts for £2,000 reverse-charge VAT. That VAT is neither paid to the subcontractor nor deducted again from the £8,400.
The payment record reconciles £8,400 cash plus £1,600 CIS to the £10,000 value. VAT recovery depends on the customer's normal entitlement.
What this shows
The valuation, tax and cash records agree. These assumptions are essential: a different VAT treatment, CIS rate or allowable cost changes the calculation.
Sources
- How to use the VAT domestic reverse charge if you buy building and construction services. HM Revenue & Customs, GOV.UK.
- VAT domestic reverse charge technical guide. HM Revenue & Customs, GOV.UK.
- What you must do as a CIS contractor: make deductions and pay subcontractors. HM Revenue & Customs, GOV.UK.